Index

A

aitchison_distance() (onecodex.models.collection.SampleCollection method) Alignments (class in onecodex.models.analysis)

alpha_diversity() (onecodex.models.collection.SampleCollection method) alpha_diversity_stats() (onecodex.models.collection.SampleCollection method) Analyses (class in onecodex.models.analysis)

B

beta_diversity() (onecodex.models.collection.SampleCollection method)

beta_diversity_stats() (onecodex.models.collection.SampleCollection method)

C

Classifications (class in onecodex.models.analysis)

D

Documents (class in onecodex.models.misc)

F

filter() (onecodex.models.collection.SampleCollection method)

J

Jobs (class in onecodex.models.misc)

M

model_config (onecodex.models.analysis.Alignments attribute) (onecodex.models.analysis.Analyses attribute) (onecodex.models.analysis.Classifications attribute) (onecodex.models.analysis.Panels attribute) (onecodex.models.misc.Documents attribute) (onecodex.models.misc.Jobs attribute) (onecodex.models.misc.Projects attribute) (onecodex.models.misc.Tags attribute) (onecodex.models.misc.Users attribute) (onecodex.models.sample.Samples attribute)

P

Panels (class in onecodex.models.analysis) plot_bargraph() (onecodex.models.collection.SampleCollection method) plot_distance() (onecodex.models.collection.SampleCollection method) plot_functional_heatmap() (onecodex.models.collection.SampleCollection method) plot_heatmap() (onecodex.models.collection.SampleCollection method)

plot_mds() (onecodex.models.collection.SampleCollection method) plot_metadata() (onecodex.models.collection.SampleCollection method) plot_pca() (onecodex.models.collection.SampleCollection method) preupload() (onecodex.models.sample.Samples class method) Projects (class in onecodex.models.misc)

R

results() (onecodex.models.analysis.Alignments method) (onecodex.models.analysis.Analyses method) (onecodex.models.analysis.Classifications method) (onecodex.models.analysis.Panels method)

S

Samples (class in onecodex.models.sample)

save() (onecodex.models.sample.Samples method)

T

table() (onecodex.models.analysis.Classifications method) Tags (class in onecodex.models.misc) to_classification_df() (onecodex.models.collection.SampleCollection method) to_df() (onecodex.models.collection.SampleCollection method)

to_functional_df() (onecodex.models.collection.SampleCollection method) to_otu() (onecodex.models.collection.SampleCollection method) tree_build() (onecodex.models.collection.SampleCollection method) tree_prune_rank() (onecodex.models.collection.SampleCollection method) tree_prune_tax_ids() (onecodex.models.collection.SampleCollection method)

U

unifrac() (onecodex.models.collection.SampleCollection method) upload() (onecodex.models.misc.Documents class method) (onecodex.models.sample.Samples class method)

Users (class in onecodex.models.misc)

W

where() (onecodex.models.analysis.Alignments class method) (onecodex.models.analysis.Analyses class method) (onecodex.models.analysis.Classifications class method) (onecodex.models.analysis.Panels class method) (onecodex.models.misc.Documents class method) (onecodex.models.misc.Jobs class method) (onecodex.models.misc.Projects class method) (onecodex.models.misc.Tags class method) (onecodex.models.misc.Users class method) (onecodex.models.sample.Samples class method)