Index

A

aitchison_distance() (onecodex.models.collection.SampleCollection method) Alignments (class in onecodex.models.analysis) all() (onecodex.models.analysis.Alignments class method) (onecodex.models.analysis.Analyses class method) (onecodex.models.analysis.Classifications class method) (onecodex.models.analysis.Panels class method) (onecodex.models.misc.Assets class method) (onecodex.models.misc.Documents class method) (onecodex.models.misc.Jobs class method) (onecodex.models.misc.Projects class method) (onecodex.models.misc.Tags class method) (onecodex.models.misc.Users class method) (onecodex.models.sample.Samples class method)

alpha_diversity() (onecodex.models.collection.SampleCollection method) alpha_diversity_stats() (onecodex.models.collection.SampleCollection method) Analyses (class in onecodex.models.analysis) Assets (class in onecodex.models.misc)

B

beta_diversity() (onecodex.models.collection.SampleCollection method)

beta_diversity_stats() (onecodex.models.collection.SampleCollection method)

C

Classifications (class in onecodex.models.analysis)

D

delete() (onecodex.models.analysis.Alignments method) (onecodex.models.analysis.Analyses method) (onecodex.models.analysis.Classifications method) (onecodex.models.analysis.Panels method) (onecodex.models.misc.Assets method) (onecodex.models.misc.Documents method) (onecodex.models.misc.Jobs method) (onecodex.models.misc.Projects method) (onecodex.models.misc.Tags method) (onecodex.models.misc.Users method) (onecodex.models.sample.Samples method)

Documents (class in onecodex.models.misc) download() (onecodex.models.misc.Assets method) (onecodex.models.misc.Documents method) (onecodex.models.sample.Samples method)

F

filter() (onecodex.models.collection.SampleCollection method)

G

get() (onecodex.models.analysis.Alignments class method) (onecodex.models.analysis.Analyses class method) (onecodex.models.analysis.Classifications class method) (onecodex.models.analysis.Panels class method) (onecodex.models.misc.Assets class method) (onecodex.models.misc.Documents class method) (onecodex.models.misc.Jobs class method) (onecodex.models.misc.Projects class method) (onecodex.models.misc.Tags class method) (onecodex.models.misc.Users class method) (onecodex.models.sample.Samples class method)

J

Jobs (class in onecodex.models.misc)

P

Panels (class in onecodex.models.analysis) plot_bargraph() (onecodex.models.collection.SampleCollection method) plot_distance() (onecodex.models.collection.SampleCollection method) plot_functional_heatmap() (onecodex.models.collection.SampleCollection method) plot_heatmap() (onecodex.models.collection.SampleCollection method)

plot_mds() (onecodex.models.collection.SampleCollection method) plot_metadata() (onecodex.models.collection.SampleCollection method) plot_pca() (onecodex.models.collection.SampleCollection method) preupload() (onecodex.models.sample.Samples class method) Projects (class in onecodex.models.misc)

R

results() (onecodex.models.analysis.Alignments method) (onecodex.models.analysis.Analyses method) (onecodex.models.analysis.Classifications method) (onecodex.models.analysis.Panels method)

S

Samples (class in onecodex.models.sample) save() (onecodex.models.analysis.Alignments method) (onecodex.models.analysis.Analyses method) (onecodex.models.analysis.Classifications method) (onecodex.models.analysis.Panels method) (onecodex.models.misc.Assets method) (onecodex.models.misc.Documents method) (onecodex.models.misc.Jobs method) (onecodex.models.misc.Projects method) (onecodex.models.misc.Tags method) (onecodex.models.misc.Users method) (onecodex.models.sample.Samples method)

T

table() (onecodex.models.analysis.Classifications method) Tags (class in onecodex.models.misc) to_classification_df() (onecodex.models.collection.SampleCollection method) to_df() (onecodex.models.collection.SampleCollection method)

to_functional_df() (onecodex.models.collection.SampleCollection method) to_otu() (onecodex.models.collection.SampleCollection method) tree_build() (onecodex.models.collection.SampleCollection method) tree_prune_rank() (onecodex.models.collection.SampleCollection method) tree_prune_tax_ids() (onecodex.models.collection.SampleCollection method)

U

unifrac() (onecodex.models.collection.SampleCollection method) upload() (onecodex.models.misc.Assets class method) (onecodex.models.misc.Documents class method) (onecodex.models.sample.Samples class method)

Users (class in onecodex.models.misc)

W

where() (onecodex.models.analysis.Alignments class method) (onecodex.models.analysis.Analyses class method) (onecodex.models.analysis.Classifications class method) (onecodex.models.analysis.Panels class method) (onecodex.models.misc.Assets class method) (onecodex.models.misc.Documents class method) (onecodex.models.misc.Jobs class method) (onecodex.models.misc.Projects class method) (onecodex.models.misc.Tags class method) (onecodex.models.misc.Users class method) (onecodex.models.sample.Samples class method)