One Codex
Contents
SampleCollection
Visualization
Statistics
Taxonomy
Models
Notebooks
GitHub
One Codex
Index
Index
A
|
B
|
C
|
D
|
F
|
J
|
M
|
P
|
R
|
S
|
T
|
U
|
W
A
aitchison_distance() (onecodex.models.collection.SampleCollection method)
Alignments (class in onecodex.models.analysis)
alpha_diversity() (onecodex.models.collection.SampleCollection method)
alpha_diversity_stats() (onecodex.models.collection.SampleCollection method)
Analyses (class in onecodex.models.analysis)
B
beta_diversity() (onecodex.models.collection.SampleCollection method)
beta_diversity_stats() (onecodex.models.collection.SampleCollection method)
C
Classifications (class in onecodex.models.analysis)
D
Documents (class in onecodex.models.misc)
F
filter() (onecodex.models.collection.SampleCollection method)
J
Jobs (class in onecodex.models.misc)
M
model_config (onecodex.models.analysis.Alignments attribute)
(onecodex.models.analysis.Analyses attribute)
(onecodex.models.analysis.Classifications attribute)
(onecodex.models.analysis.Panels attribute)
(onecodex.models.misc.Documents attribute)
(onecodex.models.misc.Jobs attribute)
(onecodex.models.misc.Projects attribute)
(onecodex.models.misc.Tags attribute)
(onecodex.models.misc.Users attribute)
(onecodex.models.sample.Samples attribute)
P
Panels (class in onecodex.models.analysis)
plot_bargraph() (onecodex.models.collection.SampleCollection method)
plot_distance() (onecodex.models.collection.SampleCollection method)
plot_functional_heatmap() (onecodex.models.collection.SampleCollection method)
plot_heatmap() (onecodex.models.collection.SampleCollection method)
plot_mds() (onecodex.models.collection.SampleCollection method)
plot_metadata() (onecodex.models.collection.SampleCollection method)
plot_pca() (onecodex.models.collection.SampleCollection method)
preupload() (onecodex.models.sample.Samples class method)
Projects (class in onecodex.models.misc)
R
results() (onecodex.models.analysis.Alignments method)
(onecodex.models.analysis.Analyses method)
(onecodex.models.analysis.Classifications method)
(onecodex.models.analysis.Panels method)
S
Samples (class in onecodex.models.sample)
save() (onecodex.models.sample.Samples method)
T
table() (onecodex.models.analysis.Classifications method)
Tags (class in onecodex.models.misc)
to_classification_df() (onecodex.models.collection.SampleCollection method)
to_df() (onecodex.models.collection.SampleCollection method)
to_functional_df() (onecodex.models.collection.SampleCollection method)
to_otu() (onecodex.models.collection.SampleCollection method)
tree_build() (onecodex.models.collection.SampleCollection method)
tree_prune_rank() (onecodex.models.collection.SampleCollection method)
tree_prune_tax_ids() (onecodex.models.collection.SampleCollection method)
U
unifrac() (onecodex.models.collection.SampleCollection method)
upload() (onecodex.models.misc.Documents class method)
(onecodex.models.sample.Samples class method)
Users (class in onecodex.models.misc)
W
where() (onecodex.models.analysis.Alignments class method)
(onecodex.models.analysis.Analyses class method)
(onecodex.models.analysis.Classifications class method)
(onecodex.models.analysis.Panels class method)
(onecodex.models.misc.Documents class method)
(onecodex.models.misc.Jobs class method)
(onecodex.models.misc.Projects class method)
(onecodex.models.misc.Tags class method)
(onecodex.models.misc.Users class method)
(onecodex.models.sample.Samples class method)